1#!/usr/bin/env cwl-runner
2### Introspector for downloaded data file
3# Copyright (c) 2021. Harvard University
4#
5# Developed by Research Software Engineering,
6# Faculty of Arts and Sciences, Research Computing (FAS RC)
7# Author: Michael A Bouzinier
8#
9# Licensed under the Apache License, Version 2.0 (the "License");
10# you may not use this file except in compliance with the License.
11# You may obtain a copy of the License at
12#
13# http://www.apache.org/licenses/LICENSE-2.0
14#
15# Unless required by applicable law or agreed to in writing, software
16# distributed under the License is distributed on an "AS IS" BASIS,
17# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18# See the License for the specific language governing permissions and
19# limitations under the License.
20#
21
22cwlVersion: v1.2
23class: CommandLineTool
24baseCommand: [python, -m, dorieh.epa.registry]
25
26doc: |
27 This tool examines a directory with downlaoded
28 EPA data and generates a table defintion
29
30
31inputs:
32 input:
33 type: File
34 inputBinding:
35 prefix: --data
36 doc: |
37 A path the downloaded data file
38 output:
39 type: string
40 doc: A path to a file name with EPA data model
41 inputBinding:
42 prefix: --output
43 table:
44 type: string
45 doc: the name of the table to be created
46 inputBinding:
47 prefix: --table
48 depends_on:
49 type: File?
50 doc: a special field used to enforce dependencies and execution order
51
52outputs:
53 log:
54 type: File?
55 outputBinding:
56 glob: "*.log"
57 model:
58 type: File?
59 outputBinding:
60 glob: "*.yaml"
61 errors:
62 type: stderr
63
64stderr: introspect.err