# Full Medicaid Processing Pipeline [Source code](medicaidcwl_src.md)  ```{contents} --- local: --- ``` **Workflow** ## Description This workflow ingests Medicaid data, provided by Centers for Medicare & Medicaid Services (CMS) to researches. The expected input format is Medicaid Analytic eXtract (MAX) data. The workflow parses File transfer summary (FTS) files, loads the raw data into a PostgreSQL DBMS and then processes the data to prepare it for using by NSAPH researches. See [documentation](../Medicaid.md) for detailed information. ## Inputs | Name | Type | Default | Description | |:----------------|:----------|:--------|:---------------------------------------------------------------------------------------------------------------------------------| | database | File | | Path to database connection file, usually database.ini | | connection_name | string | | The name of the section in the database.ini file | | input | Directory | | A path to directory, containing unpacked CMS files. The tool will recursively look for data files according to provided pattern | ## Outputs | Name | Type | Description | |:----------------------|:-----|:------------| | resource1_log | File | | | resource2_log | File | | | parse_log | File | | | ps_reset_log | File | | | ps_create_log | File | | | ps_index_log | File | | | ps_vacuum_log | File | | | ip_reset_log | File | | | ip_create_log | File | | | ip_index_log | File | | | ip_vacuum_log | File | | | ben_create_log | File | | | ben_index_log | File | | | ben_vacuum_log | File | | | mnth_create_log | File | | | mnth_index_log | File | | | mnth_vacuum_log | File | | | enrlm_create_log | File | | | enrlm_index_log | File | | | enrlm_vacuum_log | File | | | elgb_prepare_log | File | | | elgb_create_log | File | | | elgb_index_log | File | | | elgb_vacuum_log | File | | | admissions_reset_log | File | | | admissions_create_log | File | | | admissions_index_log | File | | | admissions_vacuum_log | File | | | parse_err | File | | | ps_reset_err | File | | | ps_create_err | File | | | ps_index_err | File | | | ps_vacuum_err | File | | | ip_reset_err | File | | | ip_create_err | File | | | ip_index_err | File | | | ip_vacuum_err | File | | | ben_create_err | File | | | ben_index_err | File | | | ben_vacuum_err | File | | | mnth_create_err | File | | | mnth_index_err | File | | | mnth_vacuum_err | File | | | enrlm_create_err | File | | | enrlm_index_err | File | | | enrlm_vacuum_err | File | | | elgb_create_err | File | | | elgb_prepare_err | File | | | elgb_index_err | File | | | elgb_vacuum_err | File | | | admissions_reset_err | File | | | admissions_create_err | File | | | admissions_index_err | File | | | admissions_vacuum_err | File | | ## Steps | Name | Runs | Description | |:---------------------|:------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | states | [ensure_resource.cwl](ensure_resource.md) | Ensures the presence of `us_states` table in the database. The table contains mapping between state names, ids (two letter abbreviations), FIPS codes and [ISO-3166-2 codes](https://en.wikipedia.org/wiki/ISO_3166-2) | | iso | [ensure_resource.cwl](ensure_resource.md) | Ensures the presence of `us_iso` table in the database. The table provides a mapping between states, counties and zip codes. It contains FIPS and [ISO-3166-2 codes](https://en.wikipedia.org/wiki/ISO_3166-2) | | fts | [parse_fts.cwl](parse_fts.md) | | | load_ps | [ingest_cms.cwl](ingest_cms.md) | Loads Patient Summaries | | load_ip | [ingest_cms.cwl](ingest_cms.md) | Loads inpatient admissions | | create_beneficiaries | [matview.cwl](matview.md) | Creates `Beneficiaries` Table | | create_monthly_view | [matview.cwl](matview.md) | Creates internally used `Monthly View` | | create_enrollments | [matview.cwl](matview.md) | Creates `Enrollment` Table | | prepare_eligibility | [create.cwl](create.md) | Creates `_Eligibility` View, prerequisit for creation of Eligibility table | | create_eligibility | [matview.cwl](matview.md) | Creates `Eligibility` Table | | load_admissions | [ingest_cms.cwl](ingest_cms.md) | Processes and loads inpatient admissions |