Index

A

Active symbols adm_drop_ds request adm_reload_ds request adm_update request Administration aspects overview administration file formats administration utility, [1] ANFISA_ADMIN username of Anfisa application ANFISA_HTML_BASE top url of Anfisa web-application

ANFISA_ROOT system directory path ANFISA_WORK system directory path Annotated JSON file Annotated JSON file format overview Annotation pipeline Anti-cache mechanism app.adm_mongo app.adm_update Aspect Atom auto-drop-datasets service coinfiguration option

B

Background task

C

Case Code configuration layer overview Cohort Compound_Heterozygous function Compound_Request function Condition descriptor data structure

Conditions Configuration of filtration schema API Configuration of solution pack API Configuration of viewing schema API csv_export request Custom_Inheritance function

D

data-vault service configuration option Dataset Dataset descriptor structure data structure Dataset document descriptor data structure Dataset documentation Decision tree Decision tree action data structure Decision tree atomic condition Decision tree code Decision tree point Decision Tree Point Count descriptor data structure Decision Tree Point descriptor data structure Decision tree state label defaults request Delayed request details argument of reccnt dir-files service configuration option dirinfo request DNA Variant

doc argument of export_ws doc-pygments-css service configuration option doc-report-css service configuration option druid service configuration option ds-dict property of dirinfo ds-list property of dirinfo ds2ws request ds_list request ds_stat request dsinfo request dtree_check request dtree_cmp request dtree_counts request dtree_set request dtree_stat request

E

Enumerated property excel-template service configuration option Export

export request service configuration option export_ws request

F

file argument of import_ws file format file-path-def service configuration option Filter

Filtering function Filtering properties classification Filtering property Filtering regime Filtration Functions

G

Gene panel

GeneRegion function

H

Histogram descriptor data structure host service configuration option

html-base service configuration option html-title service configuration option

I

igv-dir service configuration option import_ws request Inheritance_mode function

Installation documentation Internal UI inventory (*.CFG) file format

J

job-vault-check-period service configuration option

job_status request

L

Legacy UI current User Interface

logging service configuration option

M

macro_tagging request mirror-ui service configuration option

mongo-db service configuration option Multiset property

N

name argument of import_ws NextGen frontend future advanced User Interface

note argument of dsinfo Numeric property

P

panel filtering property Panel property panels request port service configuration option

Primary dataset Property Status data structure Property status context descriptor data structure

R

rec argument of reccnt argument of recdata argument of ws_tags argument of zone_list reccnt request recdata request

record argument of single_cnt Record descriptor data structure Root dataset Rules run-options service configuration option

S

Sample schema argument of csv_export argument of tab_report Secondary workspace seq argument of tab_report single_cnt request Solution Entry descriptor data structure Solution item solutions request service configuration option sphinx-doc-sets service configuration option

statfunc request statunits request Status property storage administration utility storage.dir support argument of export_ws Symbol panel symbol_info request symbols request

T

tab_report request tag argument of tag_select tag_select request Tagging tags argument of ws_tags

Tags descriptor data structure task argument of job_status Transcript Transcript variant Trio Tuning of filtration schema API Tuning of viewing schema API

U

Unit

V

Variant variety filtering property Variety property Vault version property of dirinfo

View Record data structure Viewing property Viewing regime vsetup request

W

work-dir service configuration option Workspace WS-dataset

ws_list request ws_tags request

X

XL-dataset

Z

Zone Zone descriptor data structure

zone_list request